0.4 (CLC Bio, Aarhus, Denmark). The sequences were assembled into 27 contigs with an N50 contig size of approximately 280 kb using CLC Genomics Workbench 7.0.4 (CLC Bio, Aarhus, Denmark) and annotated using RNAmmer 1.2 ( Lagesen et al., 2007), tRNA scan-SE 1.21 ( Lowe and Eddy, 1997), Rapid Annotation using Subsystem Technology (RAST) pipeline ( Aziz et al., 2008), and CLgenomics program by ChunLab, Inc. (http://www.chunlab.com/genomics). The draft genome

of H. sediminicola CBA1101T is 3,764,367 bp in length with 62.3% G + C content. The G + C content and the genome length of strain CBA1101T are in the range of those of the other Halococcus genomes sequenced (61.8–65.5% and 2,991,556–4,199,784 bp, respectively): H. hamelinensis 100A6T, Halococcus morrhuae DSM 1307T, Halococcus saccharolyticus DSM 5350T, Halococcus salifodinae DSM 8989T, and Halococcus thailandensis JCM 13552T. The genome was predicted to include 4179 open reading www.selleckchem.com/products/forskolin.html frames and encode 2 rRNA and 48 tRNA genes. Table 1 below shows the general features of H. sediminicola CBA1101T genome. Based on the functional categories specified in COG database (http://www.ncbi.nlm.nih.gov/COG/), 2596 genes were annotated with transport and metabolism of amino acid (277), inorganic ion (156), lipid (138), carbohydrate

(113), coenzyme (128), and nucleotide (82) and energy production and conversion (175). The 18 esterase-encoding genes were classified as follows: 2′,3′-cyclic phosphodiesterase selleck screening library and related esterases, acyl esterases/Xaa-Pro dipeptidylpeptidase, metal-dependent phosphoesterases, glycerophosphoryl diester phosphodiesterase, esterase/lipase/kynurenine formamidase, esterase/phospholipase, esterase/lipase/5′-methylthioadenosine phosphorylase, phosphoesterase, ICC-like phosphoesterases, and esterase of the alpha/beta hydrolase fold. Comparative analysis of the draft genome of strain CBA1101T with the other genomes of 5 type strains in the genus Halococcus: H. hamelinensis, H. morrhuae, H. saccharolyticus, H. salifodinae, and H. thailandensis, using EDGAR program ( Blom et al., 2009) revealed Erastin in vivo a large number of orthologous genes among 6 type strains of Halococcus genus.

The 6 strains shared 1672 coding sequences (CDS) in the core genome, corresponding 40–55% of all CDS and, interestingly, strain CBA1101T contained unique genes (27% of its genome) that are not shared with any other type strains in the genus Halococcus. Availability of the H. sediminicola CBA1101T draft genome sequence will allow for detailed comparative genome analysis with other extremely halophilic strains. The genome sequence of H. sediminicola CBA1101T (= CECT 8275T, JCM 18965T) was deposited in the DNA Data Bank of Japan (DDBJ) under the accession numbers BBMP01000001–BBMP01000027. This work was supported by the Basic Science Research Program through the National Research Foundation of Korea (2012R1A1A2040922), by project funds to J.-S.