The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) check details is shown next to the branches [81]. Acknowledgements This research was supported by the National Council of Scientific and Technological Development (CNPq) and the Programa de Apoio ao Desenvolvimento Científico e Tecnológico (PADCT). This work was also supported
by FINEP (Grant 01.07.0074-00) and FAPESB (Grant 1431080017116) and is part of the M. perniciosa proteomic project. A.B.L.P. holds a PQI/CAPES fellowship. The Fundação de Apoio à Pesquisa do Estado da Bahia (FAPESB) funded A.B.L.P., C.V.D. and M.B. and the PROIIC program of UESC funded M.M.S. We thank Antônio Figueira, Raul Valle, John Hammerstone (Mars Cacao) and Gareth W Griffith for critical reading of the manuscript and Braz Tavares da Hora Júnior for introduction to macroarray analysis. Electronic supplementary material Additional file 1: Supplemental Table S1. Differentially expressed genes between white and primordia stages evaluated by macro-arrays and Gene Bank accession numbers. (XLS 47 KB) Additional file 2: Supplemental
Table S2. Oligonucleotides used in this study with corresponding gene function. (XLS 20 KB) References 1. Aime MC, Phillips-Mora W: The causal agent of witches’ broom and frosty pod rot of cacao (chocolate, Theobroma cacao ) form a
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