Abbreviations: nac, nicotinic acid; ppbng, porphobilinogen; thm, thiamin; pan4p, pantotheine-4-phosphate; dhor-S, S-dihydroorotate. Figure 3 Effect of different metabolites on the performance of the metabolic models. Biomass production

rates (mmol g DW-1 h-1) in the two networks (strain Bge, green bars; strain Pam, red bars) were measured CB-5083 chemical structure under minimal conditions (see Fig. 2 and main text) or considering the uptake of different metabolites. FBA was also used to predict the behavior of the strain Bge in terms of growth rate when an additional metabolite was considered in the medium. We tested several metabolites with transport systems encoded by genes present in both B. cuenoti genomes (L-Asp, D-fructose, fumarate, L-Glu, glycerol, L-malate, succinate and urea) and also the input of the TCA cycle intermediate 2-oxoglutarate, as a simulation of an anaplerotic reaction. All

the considered additions had a positive effect on the biomass production rate by the Bge network, compared to the minimal medium (Fig. 3). In particular, some intermediates of the TCA cycle improved the performance of both networks with a remarkable ten-fold enhancement of biomass production by the Pam network in the presence of L-Glu and 2-oxoglutarate. This result can be correlated with the fact that the strain Pam possesses an incomplete TCA cycle. We decided to focus our attention on how the metabolic flux should be completely redirected BAY 1895344 order through the different reactions leaving or entering this pathway (see Fig. 1). Thus, the fluxes through the transaminase reactions generating 2-oxoglutarate were particularly

important because they feed the enzymatic steps of the TCA cycle downstream of the isocitrate dehydrogenase reaction (Fig. 4). In summary, the positive effect of L-Glu (and 2-oxoglutarate) on the Pam network achieved a similar performance to the Bge network due to the anaplerotic effect of these metabolites (Fig. 4). Figure 4 Flux distribution through the TCA cycle and adjacent reactions. FBA PF-02341066 concentration simulations Olopatadine of both models (strain Bge, left; strain Pam, right) were performed under minimal medium (green values) or with L-Glu uptake (red values). EC numbers are indicated (for enzyme names, see Fig. 1). The excretion of ammonia from the system, a phenomenon compatible with the physiological and experimental observations (for review see [8] and [1] and references therein), was always observed in simulations with both models under minimal conditions. The efflux of ammonia reached maximum levels when L-Glu uptake was simulated by the system. However, the efflux of ammonia stopped and could even be reversed when 2-oxoglutarate or succinate were provided to both metabolic networks. This was due to an increased assimilation of ammonia through displacement of the glutamate dehydrogenase reaction (EC 1.4.1.4) in the assimilative direction.